While markdown is the input format for Quarto, it can also in some cases be an output format (for example, if you have a website or CMS that accepts markdown as input and want to incorporate computations from Python or R).

This article covers using Quarto to generate GitHub Flavored Markdown (GFM). You might want to do this in order to:

  • Generate a GitHub from a Jupyter notebook

  • Create pages for a GitHub wiki that include computations (e.g. plot output).

GFM Format

Use the gfm format to create GitHub Flavored Markdown from Quarto. For example:

title: "My Project"
format: gfm

See the GFM format reference for a complete list of all options available for GFM output.

To create a using Quarto, start with a notebook (.ipynb) or computational markdown file (.qmd) that has README as its file name stem, for example:


title: "My Project"
format: gfm
jupyter: python3

This is a GitHub README that has content dynamically generated from Python:
1 + 1

Render the README with:

quarto render README.qmd

Which will create alongside your input file.

GitHub Wikis

If you want to use Quarto to incorporate computations into a GitHub wiki start by cloning the wiki for local editing.

Then, simply create a computational markdown file (.ipynb, .qmd) for each page in the wiki. You can render all of these files at once into their corresponding .md files using Quarto Projects. For example:

quarto render

You don’t even strictly need a Quarto project file to do this as quarto render will render all input files in a directory by default if there is no project file.